Gluten-Free Muffins in San Diego

Last updated September 2023

  • 1. Starry Lane Bakery

    137 ratings
    3925 Fourth Ave, San Diego, CA 92103
    $ • Bakery
    dedicated gluten-free badge Reported to be dedicated gluten-free

    GF menu options include: Muffins, Bread/Buns, Cakes, Cookies & more

  • 2. The Gluten Free Baking Co

    48 ratings
    4594 30th St, San Diego, CA 92116
    $ • Bakery
    dedicated gluten-free badge Reported to be dedicated gluten-free

    GF menu options include: Muffins, Bagels, Bread/Buns, Cookies & more

  • 3. The Village

    14 ratings
    2611 El Cajon Blvd, San Diego, CA 92104
    $ • Restaurant
    GF Menu

    GF menu options include: Muffins, Dessert, Fries, Pasta & more

    100% of 8 votes say it's celiac friendly

  • 4. Phatties Bake Shop

    10 ratings
    4143 Voltaire St, San Diego, CA 92107
    $ • Bakery, Cafe
    No GF Menu

    GF menu options include: Muffins, Cakes, Cupcakes, Dessert & more

    100% of 7 votes say it's celiac friendly

  • 5. Parakeet Cafe

    8 ratings
    1680 India St, San Diego, CA 92101
    $$ • Cafe
    GF Menu

    GF menu options include: Muffins, Bread/Buns, Cookies, Dessert & more

    100% of 5 votes say it's celiac friendly

  • 6. Maya Moon Collective

    3 ratings
    3349 Adams Ave, San Diego, CA 92116
    $ • Cafe
    GF Menu

    GF menu options include: Muffins, Dessert

    100% of 2 votes say it's celiac friendly

  • 7. The Cottage

    22 ratings
    7702 Fay Avenue, La Jolla, CA 92037
    $$ • Restaurant
    GF Menu

    GF menu options include: Muffins, Bread/Buns, French Toast, Sandwiches

    75% of 4 votes say it's celiac friendly

  • 8. Shorehouse Kitchen

    5 ratings
    2236 Avenida De La Playa, La Jolla, CA 92037
    $$$ • Cafe
    No GF Menu

    GF menu options include: Muffins, Bread/Buns, Burgers, Cookies & more

    100% of 2 votes say it's celiac friendly

  • 9. Achilles Coffee Roasters on Cortez Hill

    2 ratings
    703 Ash St, San Diego, CA 92101
    $ • Cafe
    GF Menu

    GF menu options include: Muffins, Bread/Buns, Sandwiches

  • 10. Bricks

    1 rating
    1 Legoland Dr, Carlsbad, CA 92008
    $$ • Pizza Restaurant
    GF Menu

    GF menu options include: Muffins, Bread/Buns, Burgers, Cookies & more

  • 11. Parakeet Cafe

    1 rating
    3745 Paseo Pl #820, San Diego, CA 92130
    $$ • Cafe, Coffee Shop
    GF Menu

    GF menu options include: Muffins, Bread/Buns, Cookies, Dessert & more

  • 12. Royal Food Mart

    1 rating
    3403 1st Ave, San Diego, CA 92103
    $ • Restaurant
    GF Menu

    GF menu options include: Muffins, Bread/Buns, Cookies, Dessert & more

  • 13. Little Owl On 9th

    1 rating
    1229 Ninth Ave, San Diego, CA 92101
    $ • Coffee Shop
    GF Menu

    GF menu options include: Muffins

  • 14. Achilles Coffee Roasters @ The Rey

    1 rating
    4602, 800 B St, San Diego, CA 92101
    $ • Restaurant
    GF Menu

    GF menu options include: Muffins, Bread/Buns

  • 15. The Gluten Free Baking Co Collective

    4 ratings
    2647 Ariane Dr, San Diego, CA 92117
    $ • Bakery
    dedicated gluten-free badge Reported to be dedicated gluten-free

    GF menu options include: Muffins, Bread/Buns, Cakes, Cookies & more

  • 16. Parakeet Juicery Coronado East

    1 rating
    943 Orange Ave, Coronado, CA 92118
    $$ • Juice Bar
    GF Menu

    GF menu options include: Muffins, Bread/Buns, Cookies, Waffles

  • 17. Achilles Coffee @ Park 12

    2 ratings
    100 Park Plaza Suite 175, San Diego, CA 92101
    $ • Cafe
    GF Menu

    GF menu options include: Muffins, Bread/Buns, Cookies, Dessert & more

    50% of 2 votes say it's celiac friendly

  • 18. Clayton's Coffee Shop

    9 ratings
    979 Orange Avenue, Coronado, CA 92118
    $ • Cafe
    No GF Menu

    GF menu options include: Muffins

    20% of 5 votes say it's celiac friendly

  • 19. Vistal Bar + Restaurant

    4 ratings
    901 Bayfront Ct Suite 1, San Diego, CA 92101
    $$$ • Restaurant
    No GF Menu

    GF menu options include: Muffins, Bagels, Bread/Buns, Dessert & more

  • 20. Sheerwater

    9 ratings
    1500 Orange Ave, Coronado, CA 92118
    $$$ • Restaurant
    No GF Menu

    GF menu options include: Muffins, Bread/Buns, Burgers, Pancakes & more

    50% of 2 votes say it's celiac friendly

  • 21. Nectarine Grove Cafe & Bakehouse

    14 ratings
    2720 Via De La Valle E110, Del Mar, CA 92014
    $$ • Cafe, Bakery
    dedicated gluten-free badge Reported to be dedicated gluten-free

    GF menu options include: Muffins, Bread/Buns, Breakfast Sandwiches, Cakes & more

  • 22. Flour Power Cakery

    4 ratings
    2389 Fletcher Pkwy, El Cajon, CA 92020
    $$ • Bakery
    GF Menu

    GF menu options include: Muffins, Bread/Buns, Cakes, Cinnamon Rolls & more

    100% of 4 votes say it's celiac friendly

  • 23. Kaffee Meister

    1 rating
    9225 Carlton Hills Blvd UNIT 30, Santee, CA 92071
    $ • Coffee Shop
    GF Menu

    GF menu options include: Muffins, Bread/Buns, Sandwiches

  • 24. Kaffee Meister - Lakeside Coffee Bar & Drive-Thru

    2 ratings
    13277 I-8BL, El Cajon, CA 92021
    $ • Coffee Shop, Cafe
    GF Menu

    GF menu options include: Muffins

  • 25. Sunny Side Kitchen

    20 ratings
    155 S Orange St, Escondido, CA 92025
    $ • Bakery, Cafe
    GF Menu

    GF menu options include: Muffins, Cookies, Dessert, Quiche

    75% of 8 votes say it's celiac friendly

  • 26. Pannikin Coffee & Tea

    7 ratings
    510 North Coast Highway 101, Encinitas, CA 92024
    $ • Cafe
    No GF Menu

    GF menu options include: Muffins, Dessert

    66% of 3 votes say it's celiac friendly

  • 27. Coffee Box

    1 rating
    2100 N Coast Hwy 101, Encinitas, CA 92024
    $$ • Coffee Shop
    No GF Menu

    GF menu options include: Muffins, Bread/Buns

  • 28. Mother Lovin From The Oven

    2 ratings
    2400 Harmony Grove Rd, Escondido, CA 92029
    $ • Bakery
    GF Menu

    GF menu options include: Muffins, Cookies

  • 29. Trilogy Sanctuary

    38 ratings
    7650 Girard Ave #400, La Jolla, CA 92037
    $$ • Vegan Restaurant
    dedicated gluten-free badge Reported to be dedicated gluten-free

    GF menu options include: Crepes, Dessert, Smoothies

    Muffins is mentioned in comments

  • 30. Snooze, an A.M. Eatery

    108 ratings
    3940 5th Ave, San Diego, CA 92103
    $ • Restaurant
    GF Menu

    GF menu options include: Beer, Bread/Buns, French Toast, Pancakes

    96% of 31 votes say it's celiac friendly
    Muffins is mentioned in comments

  • 31. Breakfast Republic

    36 ratings
    707 G St, San Diego, CA 92101
    $ • Restaurant
    GF Menu

    GF menu options include: Bread/Buns, French Toast

    96% of 26 votes say it's celiac friendly
    Muffins is mentioned in comments

  • 32. The Trails

    68 ratings
    7389 Jackson Dr, San Diego, CA 92119
    $ • Restaurant
    GF Menu

    GF menu options include: Beer, Bread/Buns, Cider, Pancakes & more

    100% of 14 votes say it's celiac friendly
    Muffins is mentioned in comments

  • 33. Jimbo's...Naturally

    4 ratings
    12853 El Camino Real, San Diego, CA 92130
    $ • Grocery Store
    No GF Menu
    Muffins is mentioned in comments

  • 34. Industrial Grind Coffee

    4 ratings
    6020 Santo Rd, San Diego, CA 92124
    $ • Coffee Shop
    GF Menu
    100% of 3 votes say it's celiac friendly
    Muffins is mentioned in comments

  • 35. Cafe 160

    16 ratings
    9275 Sky Park Court, San Diego, CA 92123
    $ • Deli, Sandwiches
    GF Menu

    GF menu options include: Bread/Buns, Sandwiches, Soup

    100% of 4 votes say it's celiac friendly
    Muffins is mentioned in comments

  • 36. Parakeet Cafe

    13 ratings
    927 Silverado St, La Jolla, CA 92037
    $ • Cafe
    GF Menu

    GF menu options include: Waffles

    80% of 5 votes say it's celiac friendly
    Muffins is mentioned in comments

  • 37. Parakeet Cafe

    1 rating
    1155 Coast Blvd, La Jolla, CA 92037
    $$ • Cafe
    No GF Menu

    GF menu options include: Dessert, Pastries

    Muffins is mentioned in comments

  • 38. Harbor Breakfast

    1 rating
    1502 India St, San Diego, CA 92101
    $$ • Breakfast & Brunch
    No GF Menu

    GF menu options include: Bread/Buns

    Muffins is mentioned in comments

  • 39. Vela

    4 ratings
    1 Park Blvd, San Diego, CA 92101
    $$ • Restaurant
    No GF Menu
    100% of 2 votes say it's celiac friendly
    Muffins is mentioned in comments

  • 40. Hotel del Coronado

    4 ratings
    1500 Orange Ave, Coronado, CA 92118
    $$
    No GF Menu
    50% of 2 votes say it's celiac friendly
    Muffins is mentioned in comments

  • 41. Nectarine Grove

    144 ratings
    948 N Coast Hwy 101, Encinitas, CA 92024
    $$ • Cafe, Bakery
    dedicated gluten-free badge Reported to be dedicated gluten-free

    GF menu options include: Beer, Bread/Buns, Burgers, Cookies & more

    Muffins is mentioned in comments

  • 42. Denny's

    3 ratings
    140 Town Center Pkwy, Santee, CA 92071
    $ • Diner
    GF Menu
    50% of 2 votes say it's celiac friendly
    Muffins is mentioned in comments

  • 43. Claire's on Cedros

    12 ratings
    246 N Cedros Ave, Solana Beach, CA 92075
    $ • Bakery, Cafe
    GF Menu

    GF menu options include: Bread/Buns

    87% of 8 votes say it's celiac friendly
    Muffins is mentioned in comments

  • 44. LEGOLAND California

    36 ratings
    1 Legoland Drive, Carlsbad, CA 92008
    $
    GF Menu
    100% of 8 votes say it's celiac friendly
    Muffins is mentioned in comments

  • 45. Trader Joe's

    3 ratings
    115 N. El Camino Real, Suite A, Encinitas, CA 92024
    $ • Grocery Store
    No GF Menu
    Muffins is mentioned in comments

  • 46. Lotus Cafe & Juice Bar

    16 ratings
    765 S Coast Hwy 101, Encinitas, CA 92024
    $$ • Cafe, Juice Bar
    GF Menu

    GF menu options include: Bread/Buns, Dessert, Sandwiches, Tacos

    100% of 2 votes say it's celiac friendly
    Muffins is mentioned in comments

  • 47. Flower Child

    13 ratings
    2690 Via De La Valle, Del Mar, CA 92014
    $$ • Restaurant
    GF Menu

    GF menu options include: Salad

    50% of 2 votes say it's celiac friendly
    Muffins is mentioned in comments
Full Screen Map

Easily find gluten-free muffins near you by downloading our free app.

Download it on the App Store
Get it on Google Play

Nearby Neighborhoods

Gluten-Free Features

Categories